Training & Protocols
Agenda - Spring 2005 Proteome Society Meeting and Informatics Workshop
Workshop Sponsored by the NCRR Proteomics Research Resource for Integrative Biology
March 31 - April 1, 2005
Pacific Northwest National Laboratory
Richland, WA
Day 1: Proteome Society Meeting
EMSL Auditorium
Thursday, March 31, 2005, 8:30 a.m. - 4:40 p.m.
8:30 - 9:00
Registration and Continental Breakfast
EMSL Lobby
9:00 - 9:15
Opening Remarks, Cara Wykowski, Proteome Society
9:15 - 9:55
LeRoy Martin, Waters Corporation,
"Monitoring of the Therepeutic Protein, Alpha galactosidase A, In Human Serum Using A Novel,
Label-Free, Multiplexed LC/MS Approach"
9:55 - 10:35
James Bruce, Washington State University,
"A New Reporter Ion Strategy for Protein Interactions"
10:35 - 11:00
Coffee Break
11:00 - 11:40
Matthew Champion, Applied Biosystems,
"LC/MS Workflows for Biomarker Discovery/Validation and, Targeted Techniques for Discovery
and Quantitation of Post-Translationally Modified Proteins"
11:40 - 12:20
Jenny Chen, University of Washington
"Identification of ARDS Biomarkers by Proteomic Analysis of Bronchoalveolar Lavage Fluid"
12:20 - 1:45
Lunch (Box Lunches)
EMSL 1075
Vendor Show
EMSL 1077
Poster Session (see list)
EMSL Lobby
1:45 - 2:25
Michael Hall, Target Discovery,
"Isotope Differentiated Binding Energy Shift Tags (IDBESTTM) for Targeted Proteomic Studies"
2:25 - 3:05
Melissa Harwood, University of Washington,
"Proteomic Analysis of Single MCF-7 Breast Cancer Cells by One- and Two-
Dimensional Capillary Electrophoresis"
3:05 - 3:20
Coffee Break
3:20 - 4:00
Jenny Cannon, Ciphergen,
"Three Biomarkers Identified from Serum Proteomic Analysis for the Detection
of Early Stage Ovarian Cancer"
4:00 - 4:40
Dick Smith, PNNL
"Approaches for high throughput and high depth of coverage quantitative
proteomics measurements for biomarker discovery"
4:40
Adjourn
Day 2:
Informatics Workshop
EMSL Auditorium
Friday, April 1, 2005, 7:45 a.m. - 5:00 p.m.
7:45 - 8:15
Continental Breakfast
Auditorium Lobby
8:15 - 8:30
Harvey Bolton, Director, Biological Sciences Division, PNNL
8:30 - 9:00
Steve Wiley, Director, Biolmolecular Science Initiative, PNNL
9:00 - 9:55
Vicki Wysocki, University of Arizona,
"Dissociation of Peptides and Their Sequence Determination"
Broad Institute of MIT and Harvard,"Increasing the certainty of LC/MS/MS Protein/Peptide
Identification in Differential Expression Proteomics" (abstract)
11:05 - 12:00 Phil Andrews, University of Michigan,
"Integration of Open Source Tools, Data Management, and Proteome Informatics" 12:00 - 1:00 Lunch (Box Lunches) EMSL 1075/1077 1:00 - 1:20 Eugene Kolker,
BIATECH,"GOBS, PEES, MASS, and LIP: who are they and why are they so important?" (Keywords)
1:20 - 1:40 Jimmy Eng,
Fred Hutchinson Cancer Research Center,"mzXML: A file format for the open representation of raw mass spectral data" (abstract)
1:40 - 2:00 Matt Monroe,
PNNL,"Incorporating mzXML into MASIC: Extending its MS/MS Data Processing Capabilities"
2:00 - 2:20 Martin McIntosh,
Fred Hutchinson Cancer Research Center,"The Role of Open Source Code and Applications in Proteomics" 2:20 - 2:30 Break 2:30 - 5:00 Panel Discussions on Data Standards
Panel Members:
Phil Andrews Martin McIntosh
Eugene Kolker Matt Monroe
Jimmy Eng
